Evolutionary Understanding of Aquaporin Transport System in the Basal Eudicot Model Species Aquilegia coerulea.
Identifieur interne : 000411 ( Main/Exploration ); précédent : 000410; suivant : 000412Evolutionary Understanding of Aquaporin Transport System in the Basal Eudicot Model Species Aquilegia coerulea.
Auteurs : Shweta Singh [Inde] ; Vacha Bhatt [Inde] ; Virender Kumar [Inde] ; Surbhi Kumawat [Inde] ; Praveen Khatri [Inde] ; Pankaj Singla [Inde] ; S M Shivaraj [Inde] ; Altaf Nadaf [Inde] ; Rupesh Deshmukh [Inde] ; Tilak Raj Sharma [Inde] ; Humira Sonah [Inde]Source :
- Plants (Basel, Switzerland) [ 2223-7747 ] ; 2020.
Abstract
Aquaporins (AQPs) play a pivotal role in the cellular transport of water and many other small solutes, influencing many physiological and developmental processes in plants. In the present study, extensive bioinformatics analysis of AQPs was performed in Aquilegia coerulea L., a model species belonging to basal eudicots, with a particular focus on understanding the AQPs role in the developing petal nectar spur. A total of 29 AQPs were identified in Aquilegia, and their phylogenetic analysis performed with previously reported AQPs from rice, poplar and Arabidopsis depicted five distinct subfamilies of AQPs. Interestingly, comparative analysis revealed the loss of an uncharacterized intrinsic protein II (XIP-II) group in Aquilegia. The absence of the entire XIP subfamily has been reported in several previous studies, however, the loss of a single clade within the XIP family has not been characterized. Furthermore, protein structure analysis of AQPs was performed to understand pore diversity, which is helpful for the prediction of solute specificity. Similarly, an AQP AqcNIP2-1 was identified in Aquilegia, predicted as a silicon influx transporter based on the presence of features such as the G-S-G-R aromatic arginine selectivity filter, the spacing between asparagine-proline-alanine (NPA) motifs and pore morphology. RNA-seq analysis showed a high expression of tonoplast intrinsic proteins (TIPs) and plasma membrane intrinsic proteins (PIPs) in the developing petal spur. The results presented here will be helpful in understanding the AQP evolution in Aquilegia and their expression regulation, particularly during floral development.
DOI: 10.3390/plants9060799
PubMed: 32604788
PubMed Central: PMC7355465
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India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra 411007</wicri:regionArea><wicri:noRegion>Maharashtra 411007</wicri:noRegion></affiliation></author><author><name sortKey="Kumar, Virender" sort="Kumar, Virender" uniqKey="Kumar V" first="Virender" last="Kumar">Virender Kumar</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author><author><name sortKey="Kumawat, Surbhi" sort="Kumawat, Surbhi" uniqKey="Kumawat S" first="Surbhi" last="Kumawat">Surbhi Kumawat</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Biotechnology, Panjab University, Chandigarh 160014, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Biotechnology, Panjab University, Chandigarh 160014</wicri:regionArea><wicri:noRegion>Chandigarh 160014</wicri:noRegion></affiliation></author><author><name sortKey="Khatri, Praveen" sort="Khatri, Praveen" uniqKey="Khatri P" first="Praveen" last="Khatri">Praveen Khatri</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author><author><name sortKey="Singla, Pankaj" sort="Singla, Pankaj" uniqKey="Singla P" first="Pankaj" last="Singla">Pankaj Singla</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author><author><name sortKey="Shivaraj, S M" sort="Shivaraj, S M" uniqKey="Shivaraj S" first="S M" last="Shivaraj">S M Shivaraj</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author><author><name sortKey="Nadaf, Altaf" sort="Nadaf, Altaf" uniqKey="Nadaf A" first="Altaf" last="Nadaf">Altaf Nadaf</name><affiliation wicri:level="1"><nlm:affiliation>Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra 411007, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra 411007</wicri:regionArea><wicri:noRegion>Maharashtra 411007</wicri:noRegion></affiliation></author><author><name sortKey="Deshmukh, Rupesh" sort="Deshmukh, Rupesh" uniqKey="Deshmukh R" first="Rupesh" last="Deshmukh">Rupesh Deshmukh</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author><author><name sortKey="Sharma, Tilak Raj" sort="Sharma, Tilak Raj" uniqKey="Sharma T" first="Tilak Raj" last="Sharma">Tilak Raj Sharma</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Division of Crop Science, Indian Council of Agricultural Research, Krishi Bhavan, New Delhi 110001, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Division of Crop Science, Indian Council of Agricultural Research, Krishi Bhavan, New Delhi 110001</wicri:regionArea><wicri:noRegion>New Delhi 110001</wicri:noRegion></affiliation></author><author><name sortKey="Sonah, Humira" sort="Sonah, Humira" uniqKey="Sonah H" first="Humira" last="Sonah">Humira Sonah</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306</wicri:regionArea><wicri:noRegion>Mohali Punjab 140306</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plants (Basel, Switzerland)</title><idno type="ISSN">2223-7747</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Aquaporins (AQPs) play a pivotal role in the cellular transport of water and many other small solutes, influencing many physiological and developmental processes in plants. In the present study, extensive bioinformatics analysis of AQPs was performed in <i>Aquilegia coerulea</i> L., a model species belonging to basal eudicots, with a particular focus on understanding the AQPs role in the developing petal nectar spur. A total of 29 AQPs were identified in <i>Aquilegia</i>, and their phylogenetic analysis performed with previously reported AQPs from rice, poplar and Arabidopsis depicted five distinct subfamilies of AQPs. Interestingly, comparative analysis revealed the loss of an uncharacterized intrinsic protein II (XIP-II) group in <i>Aquilegia.</i> The absence of the entire XIP subfamily has been reported in several previous studies, however, the loss of a single clade within the XIP family has not been characterized. Furthermore, protein structure analysis of AQPs was performed to understand pore diversity, which is helpful for the prediction of solute specificity. Similarly, an AQP AqcNIP2-1 was identified in <i>Aquilegia</i>, predicted as a silicon influx transporter based on the presence of features such as the G-S-G-R aromatic arginine selectivity filter, the spacing between asparagine-proline-alanine (NPA) motifs and pore morphology. RNA-seq analysis showed a high expression of tonoplast intrinsic proteins (TIPs) and plasma membrane intrinsic proteins (PIPs) in the developing petal spur. The results presented here will be helpful in understanding the AQP evolution in <i>Aquilegia</i> and their expression regulation, particularly during floral development.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32604788</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2223-7747</ISSN><JournalIssue CitedMedium="Print"><Volume>9</Volume><Issue>6</Issue><PubDate><Year>2020</Year><Month>Jun</Month><Day>26</Day></PubDate></JournalIssue><Title>Plants (Basel, Switzerland)</Title><ISOAbbreviation>Plants (Basel)</ISOAbbreviation></Journal><ArticleTitle>Evolutionary Understanding of Aquaporin Transport System in the Basal Eudicot Model Species <i>Aquilegia coerulea</i>.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E799</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/plants9060799</ELocationID><Abstract><AbstractText>Aquaporins (AQPs) play a pivotal role in the cellular transport of water and many other small solutes, influencing many physiological and developmental processes in plants. In the present study, extensive bioinformatics analysis of AQPs was performed in <i>Aquilegia coerulea</i> L., a model species belonging to basal eudicots, with a particular focus on understanding the AQPs role in the developing petal nectar spur. A total of 29 AQPs were identified in <i>Aquilegia</i>, and their phylogenetic analysis performed with previously reported AQPs from rice, poplar and Arabidopsis depicted five distinct subfamilies of AQPs. Interestingly, comparative analysis revealed the loss of an uncharacterized intrinsic protein II (XIP-II) group in <i>Aquilegia.</i> The absence of the entire XIP subfamily has been reported in several previous studies, however, the loss of a single clade within the XIP family has not been characterized. Furthermore, protein structure analysis of AQPs was performed to understand pore diversity, which is helpful for the prediction of solute specificity. Similarly, an AQP AqcNIP2-1 was identified in <i>Aquilegia</i>, predicted as a silicon influx transporter based on the presence of features such as the G-S-G-R aromatic arginine selectivity filter, the spacing between asparagine-proline-alanine (NPA) motifs and pore morphology. RNA-seq analysis showed a high expression of tonoplast intrinsic proteins (TIPs) and plasma membrane intrinsic proteins (PIPs) in the developing petal spur. The results presented here will be helpful in understanding the AQP evolution in <i>Aquilegia</i> and their expression regulation, particularly during floral development.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Singh</LastName><ForeName>Shweta</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bhatt</LastName><ForeName>Vacha</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra 411007, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kumar</LastName><ForeName>Virender</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kumawat</LastName><ForeName>Surbhi</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biotechnology, Panjab University, Chandigarh 160014, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Khatri</LastName><ForeName>Praveen</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Singla</LastName><ForeName>Pankaj</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shivaraj</LastName><ForeName>S M</ForeName><Initials>SM</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nadaf</LastName><ForeName>Altaf</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra 411007, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Deshmukh</LastName><ForeName>Rupesh</ForeName><Initials>R</Initials><Identifier Source="ORCID">0000-0003-4167-6552</Identifier><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharma</LastName><ForeName>Tilak Raj</ForeName><Initials>TR</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Division of Crop Science, Indian Council of Agricultural Research, Krishi Bhavan, New Delhi 110001, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sonah</LastName><ForeName>Humira</ForeName><Initials>H</Initials><Identifier Source="ORCID">0000-0003-4796-6120</Identifier><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali Punjab 140306, India.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Plants (Basel)</MedlineTA><NlmUniqueID>101596181</NlmUniqueID><ISSNLinking>2223-7747</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Aquilegia</Keyword><Keyword MajorTopicYN="N">NPA motifs</Keyword><Keyword MajorTopicYN="N">aquaporins</Keyword><Keyword MajorTopicYN="N">bioinformatics</Keyword><Keyword MajorTopicYN="N">floral development</Keyword><Keyword MajorTopicYN="N">transcriptomics</Keyword><Keyword MajorTopicYN="N">transporter</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>03</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>06</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>06</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>7</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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